December 26, 2024
Where do emotions belong in the workplace? - Everywhere!
I drafted this post a good while back, and never got around to posting it. Now that we are heading towards the end of the year, I’m going through my old drafts. Some time ago I did some leadership coaching and in that worked through the role of feelings and how they can enhance or limit our views of ourselves. At that time the followin...
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December 26, 2024
data showing AI productivity gains in materials science
This preprint - Artificial Intelligence, Scientific Discovery, and Product Innovation* - https://aidantr.github.io/files/AI_innovation.pdf from Aidan Toner Rogers at MIT https://economics.mit.edu/people/phd-students/aidan-toner-rodgers indicates that AI may be having a beneficial impact in materials science research. The preprint looks...
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December 22, 2024
Where infrastructure grows naturally, there, there may be opportunity.
Many folks have tried to build the article of the future (myself included), with the starting point of the research article. We know for sure that technology now supports integration of data, code, and narrative, and we know for certain that researchers work with a variety of complex tools, only to at the end distill them into the pape...
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December 22, 2024
My notes on the Ithaka report
I finally sat down to read through the Ithaka report on GenAI and scholarly publishing. Even though the state of the art has moved on a lot since the interviews were conducted, I still highly recommend reading this report, it's very well written: https://sr.ithaka.org/publications/a-third-transformation/#post-321519-footnote-1 I used m...
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December 22, 2024
"The truth infrastructure of the web"
I first heard this phrase at the start of November at the annual NEC publishing conference, by Fiona Romero a director at the Wikimedia foundation, in her talk - "Knowledge is Human: How Wikimedians are engaging with AI". I love this phrase, and I think it describes so well what scholarly publishing is here for. It's an idea that has b...
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December 21, 2024
Impact indicators, and clarivate.
I just had a quick read through https://clarivate.com/academia-government/blog/introducing-a-comprehensive-framework-for-evaluating-the-societal-impact-of-research/. I have two immediate thoughts. 1) It gives me the heebie jeebies that clarivate are doing this, while at the same time it is very clear why they are. By virtue of their ma...
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December 19, 2024
Why I Disagree (and Agree) with This Take on Science and Open Access
I started off not liking this post at all, but then warmed to it towards the end: https://retractionwatch.com/2024/10/21/reflecting-on-research-misconduct-whats-next-for-the-watcher-community/ I think the main gist is that science may operate in a way that is different from the way some people think it operates and if that is the case,...
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December 19, 2024
Preprint validation.
I like the authors of this piece a lot, but the piece itself doesn’t say very much at all. https://blogs.lse.ac.uk/impactofsocialsciences/2024/11/13/preprints-at-a-crossroads-are-we-compromising-openness-for-credibility/. It does make me think that preprint servers should be the crucible for experimenting with every possible type of au...
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December 17, 2024
GPT’s view on - What Have We Learned from Subscribe to Open? | Katina Magazine
https://katinamagazine.org/content/article/open-knowledge/2024/what-have-we-learned-from-subscribe-to-open I was not sure what to make of the above piece about subscribe to open, it’s not a model that I know very well. So I asked GPT O1 to do a critical read of this piece and the below seems fair. : From the evidence in the text, Subsc...
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December 17, 2024
two reports that I was interviewed for
As we get to the end of 2025 I want to link to two reports that I was interviewed for over the last year. The first looks at future health trends, looking out to 2035. https://www.thelinusgroup.com/health-2035 The "Health 2035" report shifts focus from technology-driven solutions to the perspectives of young physicians, the future lead...
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December 10, 2024
Do we need a trust credit agency in scholarly publishing?
If you work in scholarly publishing, in any capacity really, I think you should go and read the recent report from STM on trust and identity - https://stm-assoc.org/new-stm-report-trusted-identity-in-academic-publishing/. I have been thinking about the role of identity, and identity verification, in our industry for a few weeks now, an...
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December 4, 2024
STM innovations winner - Knowledge Gate Group
https://www.knowledgegategroup.com/#platform won the Vesalius innovation - https://karger.com/pages/vesalius-innovation-award. They create a network to connect experts with those who need access to that expertise. I love this idea. I've worked on a few ideas like this in the past - Nature Network had some elements to it, we kicked some...
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November 27, 2024
Some interesting looking LLM tools
HumanLayer API and SDK for integrating human oversight into AI workflows, enabling approvals and feedback via platforms like Slack and email. LangChain Framework for building applications with large language models, offering tools for reasoning, data integration, and context-aware agents. ChainForge Open-source tool for prompt engineer...
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November 27, 2024
What tools do you use for research integrity?
Some colleagues have been looking at research integrity tools . There is a partial list that they have put together https://gist.github.com/IanMulvany/e2478eb8723aaa7c77e4c9b607b6bf75. (this is not a list of tools that we are using) STM Integrity: https://www.stm-assoc.org/stm-integrity-hub/ PySciDetect: https://gricad-gitlab.univ-gren...
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November 27, 2024
Software companies as publishers?
Microsoft just announced a publishing imprint - https://blogs.microsoft.com/blog/2024/11/18/8080-books-an-imprint-of-microsoft-launches-offering-thought-leadership-titles-spanning-technology-business-and-society/, and https://unlocked.microsoft.com/8080-books/. Stripe has had an imprint for some time now - https://press.stripe.com/. I ...
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November 17, 2024
I learnt two things today that I’m surprised I didn’t know before.
1) Hawking radiation is not what I thought it was - https://www.threads.net/@spaceaccordingtoskylar/post/DCdGRiiv5Iq?xmt=AQGzOpg_N0-0T9fDfXrx93xVU-uMRZ4-_UCPelTJV5APTw - rather than being mass lost to particle antiparticle pairs, it’s to do vacuum states being distorted in curved spacetime, which makes them look lint why are creating a...
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November 11, 2024
STM Digital Preservation Webinar
Last Thursday was International Digital Preservation Day, I hope you all were greeting each other with "Happy Digital Preservation Day" salutations! While I myself didn't quite get there, I did participate in a really fun and informative webinar on the topic hosted by our friends at STM. The video is up now - https://www.youtube.com/wa...
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October 29, 2024
JOSS has a call for new editors
You can see the call here - https://blog.joss.theoj.org/2024/10/call-for-editors. Joss is the Journal of Open Source Software, and the infrastructure runs entirely within GitHub. It's a great lightweight model where the tools support the mission incredibly well. They have a nice overview of their costs here - https://blog.joss.theoj.or...
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October 4, 2024
some interesting links - week 40
AI Regular previous readers of this blog will know that I have a deep interest in how AI is, or is not, impacting our industry. Here are some interesting external links / tools that I think are worth checking out:Here’s a more readable version of the list with improved formatting: • Aider: aider.chat A CLI tool that interacts with Open...
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October 1, 2024
we should not privatise peer review
I deeply disagree with this opinion piece: Privatizing Peer Review. Back in 2008, I wrote about the relationship between publishing and the patent system, and my views have not changed since then: Patents and Peer Review. For me, the key difference between these two systems lies in how they approach the issue of scale. I don't see a sy...
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October 1, 2024
should we try to detect AI generated text?
This post by Adam Day makes the strong case that detecting AI generated text does not solve the fraudulent paper problem because AI text generators are now useful for genuine research. https://clearskiesadam.medium.com/detecting-genai-beside-the-point-01f6c3d8e05c I agree with Adam on this point, and I want to expand on two further ide...
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September 27, 2024
OpenAlex is putting together an advisory board.
OpenAlex - https://openalex.org/ is an amazing open replacement for the Microsoft Academic Graph, and an open alternative to Google Scholar. They have been going now for about five years and are now putting together an advisory board. You can see their call for members for this board here - https://docs.google.com/document/d/1TVEsfqRLA...
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September 22, 2024
McKinsey technology review.
This is a good fast scroll. https://www.mckinsey.com/capabilities/mckinsey-digital/our-insights/the-top-trends-in-tech The two things I found most interesting. 1. Two year demand for tech jobs slightly up, irrespective of recent mass layoffs in the US. 2. Investment in renewable energy dwarfs all other areas of future facing tech inves...
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September 21, 2024
visualising python dependency trees
I spent a short amount of time this morning looking at tools that can visualise dependency trees in a small python project. I'm hitting a small bug with circular imports in a tiny toy project that I am working on. The recommendation in this blog post worked for me - https://medium.com/illumination/visualize-dependencies-between-python-...
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September 8, 2024
Attention and technology - some questions.
I bought myself a kindle so that I can read books with less distraction, and broadly I believe that it’s working well. One of the books I am currently reading is the excellent Attention Span by Gloria Mark. Some notes on some really interesting ideas: • Anticipation of learning creates a reward mechanism, which browsing the web can tri...
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September 6, 2024
Reuse Dryad data and win up to $100k from the 2024 Dataworks! Prize
Health sciences researchers: Reuse Dryad data and win up to $100k from the 2024 Dataworks! Prize The DataWorks! Prize, sponsored by the Federation of American Societies for Experimental Biology (FASEB) and the National Institutes of Health (NIH), recognizes the impactful role of data reuse on human health. Successful submissions must: ...
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August 19, 2024
fund for AI training
The UK government has a fund to support training around AI, you can read about it here - https://www.gov.uk/government/publications/flexible-ai-upskilling-fund/ai-upskilling-fund-application-guide#who-can-apply. This is who can apply, and for how much: Business sizeHeadcountAnnual TurnoverBalance Sheet TotalMaximum grant funding availa...
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July 24, 2024
GenAI just over a year on - scoring my predictions
GenAI just over a year on I made some predictions in May of 2023 at the BMJ board offsite. Let's review where we are now compared to what I said just over a year ago. Distribution We said: LLMs could disrupt discovery services such as Google. Since then: Google have accelerated introducing LLMs into their own search results, this remai...
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July 24, 2024
some recent GenAI news worth catching up on
Some news worth catching up on: • Antropic launched Claude Sonnet 3.5 • Competes with Open AI’s GPT-4o on price and capability. • Important because it shows that OpenAI does not have a monopoly on high quality models. • Therefore we need to keep evaluating multiple models for our needs. • Copyright risk for use of LLMs for software has...
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June 3, 2024
I sat down to talk about how I think about GenAI in the context of BMJ
I think the video came out OK. I'm sure that my thinking is going to continue to evolve, but this is a fair snapshot circa mid 2024. https://bmj.wistia.com/medias/y4b9gfs9ae
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